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[[Category:Applications (Українська)]]
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{{List of applications navigation (Українська)}}
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== Science ==
{{Note|1=For possibly more up to date selection of scientific applications, try checking the [https://aur.archlinux.org/packages.php?O=0&do_Search=Go&detail=1&C=15&SeB=nd&SB=v&SO=d&PP=50 AUR 'science' category]}}
=== Scientific documents ===
See the main article: [[List of applications/Documents#Scientific documents]].
=== Mathematics ===
==== Calculator ====
See also [[Wikipedia:Comparison of software calculators]].
* {{App|[[Wikipedia:bc programming language|bc]]|Arbitrary precision calculator language.|http://www.gnu.org/software/bc/|{{Pkg|bc}}}}
* {{App|calc|Arbitrary precision console calculator.|http://www.isthe.com/chongo/tech/comp/calc/|{{Pkg|calc}}}}
* {{App|Extcalc|Qt-based scientfic graphical calculator.|http://extcalc-linux.sourceforge.net/|{{AUR|extcalc}}}}
* {{App|galculator|GTK+ based scientific calculator.|http://galculator.sourceforge.net/|{{Pkg|galculator}} {{pkg|galculator-gtk2}}}}
* {{App|[[Wikipedia:GNOME Calculator|GNOME Calculator]]|Scientific calculator included in the GNOME desktop.|https://wiki.gnome.org/Apps/Calculator|{{Pkg|gnome-calculator}}}}
* {{App|[[Wikipedia:GNOME Calculator|GCalctool]]|Scientific calculator included in the GNOME desktop (old GTK2 version).|http://www.gnome.org|{{AUR|gcalctool-oldgui}}}}
* {{App|KAlgebra|Calculator and 3D plotter included in KDE EDU.|http://www.kde.org/applications/education/kalgebra/|{{Pkg|kalgebra}}}}
* {{App|[[Wikipedia:KCalc|KCalc]]|Scientific calculator included in the KDE desktop.|http://kde.org/applications/utilities/kcalc/|{{Pkg|kcalc}}}}
* {{App|Qalculate|Calculator and equation solver with fault-tolerant parsing, constant recognition and units.|http://qalculate.github.io/|{{Pkg|libqalculate}}}}
* {{App|SpeedCrunch|Fast, high precision and powerful cross-platform calculator.|http://speedcrunch.org|{{Pkg|speedcrunch}}}}
* {{App|[[Wikipedia:xcalc|xcalc]]|Scientific calculator for X with algebraic and reverse polish notation modes.|http://xorg.freedesktop.org/|{{Pkg|xorg-xcalc}}}}
==== Computer algebra system ====
See also [[Wikipedia:Comparison of computer algebra systems]].
* {{App|[[Wikipedia:Axiom (computer algebra system)|AXIOM]]|FriCAS: derivative of the powerful AXIOM-CAS|http://fricas.sourceforge.net|{{AUR|fricas}}}}
* {{App|[[Wikipedia:Fermat (computer algebra system)|Fermat]]|Computer algebra system that does arithmetic of arbitrarily long integers and fractions, multivariate polynomials, symbolic calculations, matrices over polynomial rings, graphics, and other numerical calculations.|http://home.bway.net/lewis/|{{AUR|fermat}}{{Broken package link|{{aur-mirror|fermat}}}}}}
* {{App|[[Wikipedia:GAP (computer algebra system)|GAP]]|Computer algebra system for computational discrete algebra with particular emphasis on computational group theory.|http://www.gap-system.org|{{Pkg|gap}}}}
* {{App|[[Maple]]|Famous commercial CAS. Often used in education.|http://www.maplesoft.com/products/maple/|}}
* {{App|Mathics|A free CAS for symbolic mathematical computations which uses [[Python]] as its main language. It aims at achieving a Mathematica-compatible syntax and functions. It relies mostly on Sympy for most mathematical tasks and, optionally, Sage for more advanced functionality.|http://www.mathics.org/|{{AUR|mathics}}}}
* {{App|[[Wikipedia:Mathomatic|Mathomatic]]|General purpose Computer Algebra System written in C.|http://www.mathomatic.org/|{{Pkg|mathomatic}}}}
* {{App|[[Wikipedia:Maxima (software)|Maxima]]|[[Wikipedia:Maple (software)|Maple]]/[[Wikipedia:Wolfram Mathematica|Mathematica]]-like program with a wxWidgets based frontend.|http://maxima.sourceforge.net/|{{Pkg|maxima}} {{Pkg|wxmaxima}}}}
* {{App|[[Wikipedia:PARI/GP|PARI/GP]]|Computer algebra system designed for fast computations in number theory.|http://pari.math.u-bordeaux.fr/|{{Pkg|pari}}}}
* {{App|[[Wikipedia:Xcas|Xcas]]|User interface to Giac, a free, basic computer algebra system.|http://www-fourier.ujf-grenoble.fr/~parisse/giac.html|{{Pkg|xcas}}}}
==== Scientific or technical computing ====
See also [[Wikipedia:Comparison of numerical analysis software]].
* {{App|EngLab|Cross-compile mathematical platform with a C like syntax.|http://englab.bugfest.net|{{AUR|englab}}}}
* {{App|[[Wikipedia:FreeMat|FreeMat]]|Matlab-like program that supports many of its functions and features a codeless interface to external C, C++, and Fortran code, further parallel distributed algorithm development (via MPI), and 3D visualization capabilities.|http://freemat.sourceforge.net/|{{Pkg|freemat}}}}
* {{App|[[GNU Radio]]|Software development toolkit that provides signal processing blocks to implement software radios.|http://gnuradio.org/redmine/projects/gnuradio/wiki |{{Pkg|gnuradio}}}}
* {{App|[[Wikipedia:matplotlib|matplotlib (PyLab)]]|Collection of Python modules (pyplot, numpy, etc.) used for scientific calculations.|http://www.scipy.org/|{{Pkg|python-matplotlib}}}}
* {{App|[[Octave]]|[[Matlab]]-like language and interface for numerical computations.|http://www.gnu.org/software/octave/ |{{Pkg|octave}}}}
* {{App|[[Sage-mathematics]]|Mathematics software system, that combines many existing open-source packages into a common Python interface. Alternative to Magma, Maple, Mathematica and Matlab.|http://www.sagemath.org|{{Pkg|sagemath}}}}
* {{App|[[Wikipedia:Scilab|Scilab]]|Matlab alternative used for numerical computations. Its syntax is not equivalent to that of Matlab, but it can be easily converted.|http://www.scilab.org/|{{AUR|scilab}}}}
==== Statistics ====
See also [[Wikipedia:Comparison of statistical packages]].
* {{App|[[Wikipedia:Just another Gibbs sampler|JAGS]] (Just another Gibbs sampler)|Cross-platform program for analysis of Bayesian hierarchical models using Markov Chain Monte Carlo (MCMC) simulation.|http://mcmc-jags.sourceforge.net/|{{AUR|jags}}}}
* {{App|[[Wikipedia:Pandas_(software)|Python Data Analysis Library (pandas)]]| Providing high-performance, easy-to-use data structures and data analysis tools with Python programming language.|http://pandas.pydata.org/|{{Pkg|python2-pandas}} {{Pkg|python-pandas}}}}
* {{App|[[Wikipedia:PSPP|PSPP]]|Free SPSS implementation.|http://www.gnu.org/software/pspp/|{{AUR|pspp}}}}
* {{App|[[R]]|Software environment for statistical computing and graphics.|http://cran.r-project.org/|{{Pkg|r}}}}
* {{App|[[Wikipedia:RKWard|RKWard]]|Frontend for the statistical language R.|http://rkward.sourceforge.net/|{{AUR|rkward}}}}
* {{App|[[Wikipedia:RStudio|RStudio]]|A powerful and productive IDE for R written in Qt.|http://www.rstudio.com/|{{AUR|rstudio-desktop-bin}}}}
==== Data evaluation ====
See also [[Wikipedia:List of information graphics software]].
* {{App|[[Wikipedia:Fityk|Fityk]]|Curve fitting and data analysis application, predominantly used to fit analytical, bell-shaped functions to experimental data.|http://fityk.nieto.pl/|{{AUR|fityk}}}}
* {{App|[[Wikipedia:gnuplot|Gnuplot]]|Command-line program that can generate 2D and 3D plots of functions, data, and data fits. |http://www.gnuplot.info/|{{Pkg|gnuplot}}}}
* {{App|[[Wikipedia:Grace (plotting tool)|Grace]]|WYSIWYG 2D graph plotting tool.|http://plasma-gate.weizmann.ac.il/Grace/|{{Pkg|grace}} {{AUR|qtgrace}} {{AUR|gracegtk}}}}
* {{App|[[Wikipedia:LabPlot|LabPlot]]|Free software data analysis and visualization application, similar to SciDAVis.|https://labplot.kde.org/|{{AUR|labplot-kf5}}}}
* {{App|[[Wikipedia:QtiPlot|QtiPlot]]|Platform-independent application used for interactive scientific graphing and data analysis, similar to the proprietary [[Wikipedia:Origin (software)|Origin]] or [[Wikipedia:SigmaPlot|SigmaPlot]].|http://www.qtiplot.com/|{{Pkg|qtiplot}}}}
* {{App|[[Wikipedia:ROOT|ROOT]]|Data analysis program and library (originally for particle physics) developed by CERN.|http://root.cern.ch/drupal/|{{AUR|root}}}}
* {{App|[[Wikipedia:SciDAVis|SciDAVis]]|Fork of QtiPlot with the goal of being better documented and more user friendly.|http://scidavis.sourceforge.net/|{{AUR|scidavis}}}}
See also [[List of applications#Spreadsheets]]
=== Chemistry and biology ===
====Computational biology and bioinformatics====
See also [[Wikipedia:List of open source bioinformatics software]].
* {{App|[[Wikipedia:BALL|BALL]] (Biochemical Algorithms Library)|Application framework in C++ that provides an extensive set of data structures as well as classes for molecular mechanics, advanced solvation methods, comparison and analysis of protein structures, file import/export, and visualization.|http://www.ball-project.org/|{{AUR|ball}}}}
* {{App|[[Wikipedia:BioJava|BioJava]]|Set of Java tools for computational biology, as well as bioinformatics.|http://biojava.org|{{AUR|biojava}}}}
* {{App|[[Wikipedia:Biopython|Biopython]]|Python package with tools for computational biology, as well as bioinformatics.|http://biopython.org/wiki/Biopython|{{Pkg|python-biopython}} {{Pkg|python2-biopython}}}}
* {{App|[[Wikipedia:EMBOSS|EMBOSS]] (European Molecular Biology Open Software Suite)|Open source software analysis package specially developed for the needs of the molecular biology and bioinformatics user community.|http://emboss.sourceforge.net/|{{AUR|emboss}}}}
* {{App|[[Wikipedia:MEGA, Molecular Evolutionary Genetics Analysis|MEGA]] (Molecular Evolutionary Genetics Analysis)|Integrated tool for conducting automatic and manual sequence alignment, inferring phylogenetic trees, mining web-based databases, estimating rates of molecular evolution, inferring ancestral sequences, and testing evolutionary hypotheses.|http://www.megasoftware.net/}}
* {{App|[[Wikipedia:MUMmer|MUMmer]]|Bioinformatics software system for sequence alignment based on suffix trees.|http://mummer.sourceforge.net/|{{AUR|mummer}}}}
* {{App|[[Wikipedia:UGENE|UGENE]]|Application that integrates dozens of well-known biological tools and algorithms, providing both graphical user and command-line interfaces.|http://ugene.unipro.ru/|{{AUR|ugene}}}}
==== Molecules ====
===== Viewers =====
See also [[Wikipedia:List of molecular graphics systems]].
* {{App|[[Wikipedia:Avogadro_(software)|Avogadro]]|Editor, viewer and simulator for 3D molecule structures (also supports downloading files from the [[Wikipedia:Protein Data Bank|Protein Data Bank]]).|http://avogadro.openmolecules.net/wiki/Main_Page|{{Pkg|avogadro}}}}
* {{App|BALLView|Standalone molecular modeling and visualization application, part of the [[Wikipedia:BALL|BALL]] framework.|http://www.ballview.org/|{{AUR|ball}}}}
* {{App|[[Wikipedia:Ghemical|Ghemical]]|Computational chemistry software package used to edit, view and simulate molecular structures.|http://bioinformatics.org/ghemical/ghemical/index.html|{{AUR|ghemical}}}}
* {{App|[[Wikipedia:PyMOL|PyMOL]]|Open-source molecular visualization system that can produce high quality 3D images of small molecules and biological macromolecules, such as proteins.|http://pymol.org|{{Pkg|pymol}}}}
* {{App|[[Wikipedia:RasMol|RasMol]]|Computer program written for molecular graphics visualization intended and used primarily for the depiction and exploration of biological macromolecule structures.|http://www.rasmol.org/|{{AUR|rasmol}}{{Broken package link|{{aur-mirror|rasmol}}}}}}
===== Drawing =====
* {{App|[[Wikipedia:BKchem|BKChem]]|Practical and goodlooking skeletal formula molecule drawing program.|http://bkchem.zirael.org/|{{AUR|bkchem}}}}
* {{App|[[Wikipedia:Chemtool|Chemtool]]|GTK+-based program for drawing chemical structural formulas.|http://ruby.chemie.uni-freiburg.de/~martin/chemtool/chemtool.html|{{Pkg|chemtool}}}}
* {{App|EasyChem|Simple skeletal formula molecule drawing program with a focus on producing press-quality figures.|http://easychem.sourceforge.net/|{{AUR?|easychem}}}}
* {{App|[[Wikipedia:Gabedit|Gabedit]]|Graphical user interface to computational chemistry packages like [[Wikipedia:GAMESS (US)|GAMESS]], [[Wikipedia:Gaussian (software)|Gaussian]], [[Wikipedia:MOLCAS|MOLCAS]], [[Wikipedia:MOLPRO|MOLPRO]], [[Wikipedia:MPQC|MPQC]], [[Wikipedia:MOPAC|OpenMopac]], [[Wikipedia:PC GAMESS|Firefly]] (previously PC GAMESS) and [[Wikipedia:Q-Chem|Q-Chem]].|http://gabedit.sourceforge.net/|{{AUR|gabedit}}}}
===== Modeling =====
* {{App|[[GROMACS]] (GROningen MAchine for Chemical Simulations)|Versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles.|http://www.gromacs.org|{{AUR|gromacs}}}}
* {{App|[[Wikipedia:Quantum ESPRESSO|Quantum ESPRESSO]]|Integrated suite of applications for electronic-structure calculations and materials modeling at nanoscale. It is based on density-functional theory, plane waves, and pseudopotentials (both norm-conserving and ultrasoft).|http://www.quantum-espresso.org/|{{AUR|quantum-espresso}}}}
==== Periodic table ====
* {{App|eperiodique|A simple Periodic Table Of Elements viewer using the EFL.|http://eperiodique.sourceforge.net/|{{AUR|eperiodique}}}}
* {{App|gElemental|Periodic table of the elements with additional information.|http://freshmeat.net/projects/gelemental|{{AUR|gelemental}}}}
* {{App|[[Wikipedia:Kalzium|Kalzium]]|Periodic table of the elements with molecule editor and equation solver from the [[KDE]] desktop.|http://edu.kde.org/kalzium/|{{Pkg|kdeedu-kalzium}}}}
==== Biochemistry ====
* {{App|[[Wikipedia:Bioclipse|Bioclipse]]|Java-based visual platform for biochemistry that uses the Eclipse Rich Client Platform (RCP).|http://www.bioclipse.net/|{{AUR?|bioclipse}}}}
==== Image manipulation ====
* {{App|[[Wikipedia:ImageJ|ImageJ]]|Java-based image processing and analysing program that provides extensibility via plugins and macros. It is widely used in microscopy (e.g. for cell counting).|http://rsb.info.nih.gov/ij|{{AUR|imagej}}}}
* {{App|[[Wikipedia:FIJI_(software)|Fiji]]|ImageJ distribution (and soon ImageJ2) with a lot of plugins organized into a coherent menu structure.|http://fiji.sc|{{AUR|fiji-binary}}}}
=== Astronomy ===
* {{App|[[Wikipedia:Celestia|Celestia]]|3D astronomy simulation program that allows users to travel through an extensive universe, modeled after reality, at any speed, in any direction and at any time in history.|http://www.shatters.net/celestia/|{{Pkg|celestia}}}}
* {{App|GIMP Astronomy Plugins|Set of GIMP plugins for astronomical image processing.|http://hennigbuam.de/georg/gimp.html|{{AUR|gimp-plugin-astronomy}}}}
* {{App|GoQat|Camera acquisition software, especially for QSI cameras, that provides other features such as autoguiding, focusing help and others.|http://canburytech.net/GoQat/|{{AUR|goqat}}}}
* {{App|[[Wikipedia:KStars|KStars]]|Planetarium application that provides an accurate graphical simulation of the night sky, from any location on Earth, at any date and time. It is included in KDE Edu.|http://edu.kde.org/kstars/|{{Pkg|kstars}}}}
* {{App|Open PHD Guiding|Telescope autoguiding software based on the famous PHD Guiding.|http://openphdguiding.org/|{{AUR|open-phd-guiding-svn}}{{Broken package link|{{aur-mirror|open-phd-guiding-svn}}}}}}
* {{App|Qastrocam-g2|Webcam acquisition software for planetary imaging.|http://sourceforge.net/projects/qastrocam-g2/|{{AUR|qastrocam-g2}}}}
* {{App|[[Wikipedia:Cartes du Ciel|Skychart / Cartes du Ciel]]|Planetarium that maps out and labels most of the constellations, planets, and objects you can see with a telescope. It can also download Digitized Sky Survey Charts and superimpose images over these charts.|http://www.ap-i.net/skychart/start/|{{AUR|skychart}}}}
* {{App|StarPlot|3-dimensional star chart viewer.|http://starplot.org/|{{AUR|starplot}}}}
* {{App|[[Wikipedia:Stellarium (computer program)|Stellarium]]|Beautiful 3D planetarium that uses OpenGL to render a realistic sky in real time.|http://www.stellarium.org/|{{Pkg|stellarium}}}}
* {{App|Where Is M13|Application to visualize the locations and physical properties of deep sky objects.|http://www.thinkastronomy.com/M13/|{{AUR|where-is-m13}}}}
* {{App|[[Wikipedia:XEphem|XEphem]]|Motif-based ephemeris and planetarium program.|http://www.clearskyinstitute.com/xephem/xephem.html|{{AUR|xephem}}}}
=== Physics ===
==== Electronics ====
See also [[Wikipedia:Comparison of EDA software]].
===== Digital logic =====
Digital logic software are mainly simple educational tools that intended for only designing and simulating logic circuits.
* {{App|glogic|An educational graphical logic circuit simulator.|https://launchpad.net/glogic|{{AUR|glogic}}}}
* {{App|Logisim|Educational digital logic design and simulation software, written in Java, officially its development has stopped.|http://sourceforge.net/projects/circuit/|{{AUR|logisim}}}}
* {{App|Logisim Evolution|Project which continue the development of the original Logisim with new features, written in Java.|https://github.com/reds-heig/logisim-evolution|{{AUR|logisim-evolution-git}}}}
* {{App|SmartSim|Simple and beautiful digital logic circuit design and simulation software, mainly target teachers and students, very lightweight and cross platform, GPL licensed, written in Vala.|http://smartsim.org.uk|{{AUR|smartsim-git}}}}
===== HDL =====
* {{App|[[Altera Design Software]]|A set of design tools for Altera's FPGA chips that includes Quartus II and ModelSim-Altera.|http://www.altera.com/products/software/sfw-index.jsp|see [[Altera Design Software]]}}
* {{App|[[Xilinx ISE WebPACK]]|FPGA programmable logic design suit.|http://www.xilinx.com/products/design-tools/ise-design-suite/ise-webpack.html|see [[Xilinx ISE WebPACK]]}}
===== MCU IDE =====
* {{App|[[Arduino]]|Arduino prototyping platform SDK.|http://arduino.cc/en/Main/Software|{{AUR|arduino}}}}
===== Schematic capture editor =====
* {{App|[[gEDA]]|Full suite and toolkit of Electronic Design Automation tools that are used for electrical circuit design, schematic capture, simulation, prototyping, and production.|http://www.geda-project.org/|{{Pkg|geda-gaf}}}}
* {{App|[[Wikipedia:KiCAD|KiCAD]]|Software suite for electronic design automation (EDA) that facilitates the design of schematics for electronic circuits and their conversion to PCB (printed circuit board).|http://www.kicad-pcb.org/display/KICAD/KiCad+EDA+Software+Suite|{{Pkg|kicad}}}}
* {{App|[[Wikipedia:Oregano (software)|Oregano]]|Graphical software application for schematic capture and simulation of electrical circuits. The actual simulation is done by the [[Wikipedia:Ngspice|ngspice]] or [[Wikipedia:GNU Circuit Analysis Package|Gnucap]] engines.|https://github.com/drahnr/oregano|{{AUR|oregano}}}}
* {{App|QElectroTech|Application used to draw advanced electrical circuits.|http://qelectrotech.org/|{{AUR|qelectrotech}}}}
* {{App|[[Wikipedia:Quite Universal Circuit Simulator|Qucs]]|Electronics circuit simulator application that gives you the ability to set up a circuit with a graphical user interface and simulate its large-signal, small-signal and noise behaviour.|http://qucs.sourceforge.net/|{{Pkg|qucs}}}}
==== Physics simulation ====
* {{App|[[Wikipedia:Code_Aster|Code_Aster]]|Software package for Civil and Structural Engineering finite element analysis and numeric simulation in structural mechanics.|http://www.code-aster.org/V2/spip.php?rubrique2|{{AUR|aster}}}}
* {{App|[[Wikipedia:EPANET|EPANET]]|EPANET performs extended period simulation of the water movement and quality behavior within pressurized pipe networks.|http://www.epa.gov/|{{AUR|epanet2-git}}}}
* {{App|[[Wikipedia:Step (software)|Step]]|Two-dimensional physics simulation engine that is included in the KDE desktop as part of KDE Edu.|http://edu.kde.org/step/|{{Pkg|step}}}}
* {{App|[[Wikipedia:SWMM|SWMM]]|Storm Water Management Model is a dynamic rainfall-runoff-subsurface runoff simulation model used for simulation of the surface/subsurface hydrology quantity and quality.|http://www.epa.gov/|{{AUR|swmm5-git}}}}
==== Unit conversion ====
* {{App|ConvertAll|Unit conversion application that allows one to combine units in any way (e.g. inches per decade), even if it does not make sense.|http://convertall.bellz.org/|{{AUR|convertall}}}}
* {{App|Gonvert|Conversion utility that allows conversion between many units like CGS, Ancient, Imperial with many categories like length, mass, numbers, etc.|http://www.unihedron.com/projects/gonvert/|{{AUR|gonvert}}}}
* {{App|[[Wikipedia:GNU Units|Units]]|Command-line unit converter and calculator that can handle multiplicative scale changes, nonlinear conversions such as Fahrenheit to Celsius or wire gauge and others.|http://www.gnu.org/s/units/|{{Pkg|units}}}}
=== Geography ===
* {{App|GNOME Maps|A simple map client for GNOME. Part of {{Grp|gnome-extra}}.|https://wiki.gnome.org/Apps/Maps|{{Pkg|gnome-maps}}}}
* {{App|JOSM|An editor for OpenStreetMap written in Java.|http://josm.openstreetmap.de/|{{Pkg|josm}}}}
* {{App|Marble|Virtual Globe and World Atlas that can be used to learn more about the Earth. Part of {{Grp|kdeedu}}.|https://www.kde.org/applications/education/marble|{{Pkg|marble}}}}
* {{App|Merkaartor|OpenStreetMap editor.|http://merkaartor.be/|{{Pkg|merkaartor}}}}
* {{App|Viking|GTK+2 application to manage GPS data.|http://viking.sourceforge.net/|{{Pkg|viking}}}}