Schedule: changed all links to current semester
←Older revision
Revision as of 22:46, 11 January 2013
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| Introduction to nitrogen metabolism
| Introduction to nitrogen metabolism
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Discuss the [[BIOL398-
01
/
S11
:Week 1 | Week 1 assignment]] (accounts should be ready to wiki at this point)
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Discuss the [[BIOL398-
03
/
S13
:Week 1 | Week 1 assignment]] (accounts should be ready to wiki at this point)
* Quick wiki overview
* Quick wiki overview
* User wiki page setup
* User wiki page setup
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''Jan 18: last day to add or drop a class without a grade of W''
''Jan 18: last day to add or drop a class without a grade of W''
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| [[BIOL398-
01
/
S11
:Week 1 | Week 1 Assignment]]
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| [[BIOL398-
03
/
S13
:Week 1 | Week 1 Assignment]]
''Due midnight 1/18''
''Due midnight 1/18''
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[[BIOL398-
01
/
S11
:Class Journal Week 1 | Class Journal Week 1]]
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[[BIOL398-
03
/
S13
:Class Journal Week 1 | Class Journal Week 1]]
|--
|--
| '''2'''
| '''2'''
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| [http://www.idea.wsu.edu/ChemKinetics/ Chem Kinetics Background] [http://people.cs.ubc.ca/~cavers/MatlabGuide/guide.html Matlab tutorial]
| [http://www.idea.wsu.edu/ChemKinetics/ Chem Kinetics Background] [http://people.cs.ubc.ca/~cavers/MatlabGuide/guide.html Matlab tutorial]
| Enzyme kinetics/nitrogen metabolism
| Enzyme kinetics/nitrogen metabolism
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| [[BIOL398-
01
/
S11
:Week 2 | Week 2 Assignment]]
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| [[BIOL398-
03
/
S13
:Week 2 | Week 2 Assignment]]
''Due midnight 1/25''
''Due midnight 1/25''
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[[BIOL398-
01
/
S11
:Class Journal Week 2 | Class Journal Week 2]]
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[[BIOL398-
03
/
S13
:Class Journal Week 2 | Class Journal Week 2]]
|--
|--
| '''3'''
| '''3'''
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|
|
| Metabolic pathway modeling project
| Metabolic pathway modeling project
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| [[BIOL398-
01
/
S11
:Week 3 | Week 3 Assignment]]
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| [[BIOL398-
03
/
S13
:Week 3 | Week 3 Assignment]]
''Due midnight 2/1''
''Due midnight 2/1''
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[[BIOL398-
01
/
S11
:Class Journal Week 3 | Class Journal Week 3]]
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[[BIOL398-
03
/
S13
:Class Journal Week 3 | Class Journal Week 3]]
|--
|--
| '''4'''
| '''4'''
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| [http://www.ncsu.edu/crsc/htbanks/STMA810c/chemostat.pdf Chemostat]
| [http://www.ncsu.edu/crsc/htbanks/STMA810c/chemostat.pdf Chemostat]
| Metabolic pathway modeling project
| Metabolic pathway modeling project
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| [[BIOL398-
01
/
S11
:Week 4 | Week 4 Assignment]]
+
| [[BIOL398-
03
/
S13
:Week 4 | Week 4 Assignment]]
''Due midnight 2/8''
''Due midnight 2/8''
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[[BIOL398-
01
/
S11
:Class Journal Week 4 | Class Journal Week 4]]
+
[[BIOL398-
03
/
S13
:Class Journal Week 4 | Class Journal Week 4]]
|--
|--
| '''5'''
| '''5'''
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|
|
| Metabolic pathway modeling project
| Metabolic pathway modeling project
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| [[BIOL398-
01
/
S11
:Week 5 | Week 5 Assignment]]
+
| [[BIOL398-
03
/
S13
:Week 5 | Week 5 Assignment]]
''Due midnight 2/15''
''Due midnight 2/15''
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[[BIOL398-
01
/
S11
:Class Journal Week 5 | Class Journal Week 5]]
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[[BIOL398-
03
/
S13
:Class Journal Week 5 | Class Journal Week 5]]
|--
|--
| '''6'''
| '''6'''
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[https://mylmuconnect.lmu.edu/webapps/portal/frameset.jsp?tab_tab_group_id=_2_1&url=%2Fwebapps%2Fblackboard%2Fexecute%2Flauncher%3Ftype%3DCourse%26id%3D_21252_1%26url%3D Slides are posted on MyLMUConnect]
[https://mylmuconnect.lmu.edu/webapps/portal/frameset.jsp?tab_tab_group_id=_2_1&url=%2Fwebapps%2Fblackboard%2Fexecute%2Flauncher%3Ftype%3DCourse%26id%3D_21252_1%26url%3D Slides are posted on MyLMUConnect]
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| [[BIOL398-
01
/
S11
:Week 6 | Week 6 Assignment]]
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| [[BIOL398-
03
/
S13
:Week 6 | Week 6 Assignment]]
Due midnight 2/22
Due midnight 2/22
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[[BIOL398-
01
/
S11
:Class Journal Week 6 | Class Journal Week 6]]
+
[[BIOL398-
03
/
S13
:Class Journal Week 6 | Class Journal Week 6]]
|--
|--
| '''7'''
| '''7'''
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Feb 28
Feb 28
|
|
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| [[BIOL398-
01
/
S11
:Metabolic Pathway Presentation | Research Presentation 1: Metabolic Pathways]]
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| [[BIOL398-
03
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S13
:Metabolic Pathway Presentation | Research Presentation 1: Metabolic Pathways]]
[[Media:PresentationGuidelines.ppt | PowerPoint Presentation Guidelines]]
[[Media:PresentationGuidelines.ppt | PowerPoint Presentation Guidelines]]
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* [https://mylmuconnect.lmu.edu/webapps/portal/frameset.jsp?tab_tab_group_id=_2_1url=%2Fwebapps%2Fblackboard%2Fexecute%2Flauncher%3Ftype%3DCourse%26id%3D_21252_1%26url%3D Slides on MyLMUConnect]
* [https://mylmuconnect.lmu.edu/webapps/portal/frameset.jsp?tab_tab_group_id=_2_1url=%2Fwebapps%2Fblackboard%2Fexecute%2Flauncher%3Ftype%3DCourse%26id%3D_21252_1%26url%3D Slides on MyLMUConnect]
* [http://www.dnalc.org/resources/3d/TranslationBasic_withFX0.html Translation animation]
* [http://www.dnalc.org/resources/3d/TranslationBasic_withFX0.html Translation animation]
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| [[BIOL398-
01
/
S11
:Week 8 | Week 8 Assignment]]
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| [[BIOL398-
03
/
S13
:Week 8 | Week 8 Assignment]]
''Due midnight 3/15''
''Due midnight 3/15''
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[[BIOL398-
01
/
S11
:Class Journal Week 8 | Class Journal Week 8]]
+
[[BIOL398-
03
/
S13
:Class Journal Week 8 | Class Journal Week 8]]
|--
|--
| '''9'''
| '''9'''
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''Mar 18: Last day to withdraw or change to credit/no-credit status''
''Mar 18: Last day to withdraw or change to credit/no-credit status''
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| [[BIOL398-
01
/
S11
:Week 9 | Week 9 Assignment]]
+
| [[BIOL398-
03
/
S13
:Week 9 | Week 9 Assignment]]
''Due midnight 3/22''
''Due midnight 3/22''
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[[BIOL398-
01
/
S11
:Class Journal Week 9 | Class Journal Week 9]]
+
[[BIOL398-
03
/
S13
:Class Journal Week 9 | Class Journal Week 9]]
|--
|--
| '''10'''
| '''10'''
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Regulatory Transcription Factors
Regulatory Transcription Factors
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Start [[BIOL398-
01
/
S11
:Week 11 | Week 11 Assignment]] in class
+
Start [[BIOL398-
03
/
S13
:Week 11 | Week 11 Assignment]] in class
-
| [[BIOL398-
01
/
S11
:Week 11 | Week 11 Assignment]]
+
| [[BIOL398-
03
/
S13
:Week 11 | Week 11 Assignment]]
''Due midnight 4/5''
''Due midnight 4/5''
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[[BIOL398-
01
/
S11
:Class Journal Week 11 | Class Journal Week 11]]
+
[[BIOL398-
03
/
S13
:Class Journal Week 11 | Class Journal Week 11]]
|--
|--
| '''12'''
| '''12'''
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| [http://www.sciencemag.org/content/298/5594/763.full?sid=b06c10fd-ebcf-4e75-9842-b44d7e650170 Oltvai & Barabasi (2002) ''Science''], [http://www.sciencemag.org/content/298/5594/799.full?ijkey=88vy6NpPKM4iQ Lee ''et al.'' (2002) ''Science''], [http://www.nature.com/nature/journal/v431/n7004/full/nature02800.html Harbison ''et al.'' (2004) ''Nature''], and [http://www.biomedcentral.com/1471-2105/7/113 MacIsaac ''et al.'' (2006) ''BMC Bioinformatics'']
| [http://www.sciencemag.org/content/298/5594/763.full?sid=b06c10fd-ebcf-4e75-9842-b44d7e650170 Oltvai & Barabasi (2002) ''Science''], [http://www.sciencemag.org/content/298/5594/799.full?ijkey=88vy6NpPKM4iQ Lee ''et al.'' (2002) ''Science''], [http://www.nature.com/nature/journal/v431/n7004/full/nature02800.html Harbison ''et al.'' (2004) ''Nature''], and [http://www.biomedcentral.com/1471-2105/7/113 MacIsaac ''et al.'' (2006) ''BMC Bioinformatics'']
| Gene regulatory networks
| Gene regulatory networks
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|[[BIOL398-
01
/
S11
:Week 12 | Week 12 Assignment]]
+
|[[BIOL398-
03
/
S13
:Week 12 | Week 12 Assignment]]
''Due midnight 4/12''
''Due midnight 4/12''
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[[BIOL398-
01
/
S11
:Class Journal Week 12 | Class Journal Week 12]]
+
[[BIOL398-
03
/
S13
:Class Journal Week 12 | Class Journal Week 12]]
|--
|--
| '''13'''
| '''13'''
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| TBA
| TBA
| Gene regulatory network modeling project: estimating parameters
| Gene regulatory network modeling project: estimating parameters
-
| [[BIOL398-
01
/
S11
:Week 13 | Week 13 Assignment]]
+
| [[BIOL398-
03
/
S13
:Week 13 | Week 13 Assignment]]
''Due midnight 4/19''
''Due midnight 4/19''
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[[BIOL398-
01
/
S11
:Class Journal Week 13|Class Journal: Week 13]]
+
[[BIOL398-
03
/
S13
:Class Journal Week 13|Class Journal: Week 13]]
|--
|--
| '''14'''
| '''14'''
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|
|
|
|
-
| [[BIOL398-
01
/
S11
:Week 14 | Week 14 Assignment]]
+
| [[BIOL398-
03
/
S13
:Week 14 | Week 14 Assignment]]
''Due midnight 4/26''
''Due midnight 4/26''
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[[BIOL398-
01
/
S11
:Class Journal Week 14 | Class Journal Week 14]]
+
[[BIOL398-
03
/
S13
:Class Journal Week 14 | Class Journal Week 14]]
|--
|--
| '''15'''
| '''15'''